PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009607347.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 559aa    MW: 62134.5 Da    PI: 7.3004
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009607347.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.81.9e-1659105148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT+eEd+ l +av+ + g++Wk+Ia+ ++  R++ qc +rwqk+l
   XP_009607347.1  59 KGGWTPEEDDTLRRAVAVYRGKCWKKIAEFFP-DRSEVQCLHRWQKVL 105
                      688*****************************.************986 PP

2Myb_DNA-binding591e-18111157148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEd++++++v ++G+  W+ Ia+ ++ gR +kqc++rw+++l
   XP_009607347.1 111 KGPWTQEEDDKIIELVVRYGPTKWSVIAKSLP-GRIGKQCRERWHNHL 157
                      79******************************.*************97 PP

3Myb_DNA-binding55.71.1e-17163206146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +++WT eE++ l+da++ +G++ W+ Ia+ ++ gRt++ +k++w++
   XP_009607347.1 163 KDAWTLEEELALLDAHRIYGNK-WAEIAKVLP-GRTDNAIKNHWNS 206
                      679*******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.38154105IPR017930Myb domain
SuperFamilySSF466892.8E-1555112IPR009057Homeodomain-like
SMARTSM007174.1E-1558107IPR001005SANT/Myb domain
PfamPF002491.9E-1559105IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-2261113IPR009057Homeodomain-like
CDDcd001675.94E-1362105No hitNo description
PROSITE profilePS5129431.313106161IPR017930Myb domain
SuperFamilySSF466892.77E-31108204IPR009057Homeodomain-like
SMARTSM007172.2E-17110159IPR001005SANT/Myb domain
PfamPF002495.6E-18111157IPR001005SANT/Myb domain
CDDcd001671.10E-14113157No hitNo description
Gene3DG3DSA:1.10.10.605.3E-27114160IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.2E-23161212IPR009057Homeodomain-like
SMARTSM007174.7E-17162210IPR001005SANT/Myb domain
PROSITE profilePS5129422.569162212IPR017930Myb domain
PfamPF002491.9E-15163206IPR001005SANT/Myb domain
CDDcd001671.16E-12165205No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 559 aa     Download sequence    Send to blast
MDELKIEDCC TENKQSTAAS ASSVSENSGS VTVKSLEVCS PTPTSPAHRR TTGPIRRAKG  60
GWTPEEDDTL RRAVAVYRGK CWKKIAEFFP DRSEVQCLHR WQKVLNPDLV KGPWTQEEDD  120
KIIELVVRYG PTKWSVIAKS LPGRIGKQCR ERWHNHLNPN IKKDAWTLEE ELALLDAHRI  180
YGNKWAEIAK VLPGRTDNAI KNHWNSSMKK KLDFYLATGN LPSVGRDGLQ NGCKDTTGTA  240
SAEKALVCSH KGSDSTELAS SGTTDVCKIE NCDKNHQDAK LLVVNIDASN SGPKNESADS  300
EVVRWEAESP VMDSIHVKQI KEIKFEGYGK NSEVDQFKVI ETPFSCEIPT CGTLYYEPPQ  360
LESCISMDSD HLNIRWAHCE SDSSPSLSPS SFLTPPSSLK GSSLYSQTPE SILKIAARSF  420
PNTPSIFRKR KLNSTPGNKI GNADGDTHKD EVHDACEDKQ TDSSENKQTD SSEKYVMIRS  480
SSKNPSYNGI GPCDTEAFNA SPPYRVRSKR KSIFRSVEKQ LKFAFDNEQH NTSTGINDST  540
VKEISHVADC LRATRMGIT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-68582125159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-68582125159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009607346.10.0PREDICTED: uncharacterized protein LOC104101571 isoform X1
TrEMBLM1AHL20.0M1AHL2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000230120.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.21e-138myb domain protein 3r-5